Water resource management in arid and semi-arid regions has some differences with other regions. Because in these areas due to the hydrological conditions, surface water resources are less accessible, and this limitation couses higher groundwater extractions from aquifers. Along with a poor management, specifically in urban areas, it makes the resources more susceptible and intensifies the effects of climate change. Consequently, an integrated management is necessary for long-term organization and conservation of water resources in arid and semi-arid regions. Isfahan is the third-largest city of Iran located in the central Iran plateau has a semi-aried climate and the only surface water resource of the region has formed a seasonal river named Zayandeh-rud. Accordingly the best runoff management practices for the city were studied and the most suitable methods in terms of their effectiveness in conservation and recharge of groundwater basin and compatibility with the area were selected. In order to modelling surface runoff based on long-term precipitation data and some watershed characteristics collected, organized and were prepared for analysis. So runoff modeling results from SCS method, were presented in the study area for every month. In addition main sub-basins in the study area were specified and the annual and monthly runoff volumes through the normal conditions were calculated. Then according to the calculated runoff volume and status of each zone with respect to intensity of flooded areas, all the recharge rate coefficients for different zones for each month and three cases (normal, wet and dry conditions) were computed utilizing ArcGIS. Therefore the recharge rate coefficients were entered into the groundwater model for estimating natural and artificial groundwater recharge. The annual artificial recharge beneath usage of specified BMP's in three different zones indicates that the potential of annual recharge in dry, normal and wet years are 2.37, 11.08 and 37.53 MCM respectively. However, implementation of BMP's; in order to controlling runoff through recharge methods, can effects on hydraulic facilities dimensions that's making operation easier and more economical. Key words: Integrated Management, Surface runoff, Artificial groundwater recharge methods.