Central Zagros includes the richest genetic sources in Iran and Fritllaria imprialis L. grows there. The Fritillaria imperialis is mainly important in terms of its medicinal,ecotourism attraction and application in green parts aspects. Alkaloids and glycosids are the most important chemical compounds of this plant that characterized therapeutic effect of these compounds on lymphatic diseases, rheumatic pains and clearing agent for liver. Samples of Fritllaria imprialis were taken from five site in the West of Isfahan Province (Gol hony, Gharsonak, Ghalhko, Ghordareh and Dareh bid) and the most important Alkloid and inorganic elements were specified and compared . Flame photometric and atomic absorption were used to determine the inorganic elements and TLC Scanner for Alkloid determination. The results showed that The comparison of inorganic element of Fritllaria imprialis revealed in the different organs (flower, foliage and bulb) for five site calcium havethe most)15 , 20.6 and 18.6 mg/kg respectively ) and phosphor(.0005,.0003 and 0003 mg/kg) the least. type and amount of alkaloids in bulb was more than other organs such as flower,branch and leaf.also the amount of alkaloids in patch 2 were more than other site. By studying existing similarity between investigated areas and specifications and determining relationshi between quality indices of Fritllaria imprialis habitat (locations No. 1,2,3and 4) which Eastdrection ,caco3, dryne coeficient of Demarten , elevation, wet coeficient of Amberjeh , mean frozen days, mean annual Precipitation and uptakable amount of potassium in effective factor together quantity index of phosphor,sodium, potassium , amounts of flower, branch – leaf and bulb Alkloids and type of flower Alkaloid were significant in separating site. The Second habitat ( location No.5) in which annual evaporation and trairation, annual evaporation, annual mean temperature,minimum annualtemperature,maximum annual temperature and lenght of day period in effective factor together quantity index of type of, branch – leaf Alkloid and amount of exchangeable calcium were significant in separating site.The Key words: Fritllaria imprialis, Alkloid, inorganic elements, ordination, Central Zagros